GenePattern at IU NCGAS

GenePattern @ Indiana University

The GenePattern team, in collaboration with Indiana University’s (IU) National Center for Genome Analysis Support (NCGAS), hosts a public GenePattern server on IU’s high performance Mason computing system. The increased server capacity better accommodates next generation sequencing analysis and other compute intensive analyses.

The GenePattern-IU server is available at

  • This resource is freely available for academic and non-profit users.
  • You will need to register for an account, as accounts on different servers are independent from each other. 
    • If you have an account on another GenePattern server, please click here for details on how to share your data between GenePattern server accounts. 
  • Differences between GenePattern @ IU and the Broad Institute-hosted GenePattern server:
    • There is currently no quota on the IU server, with regard to the number jobs you may submit or the amount of data you may upload.
    • Your job results will be kept on the server for 30 days, as compared with 7 days on the Broad server.
  • The server is unavailable on the first Tuesday of every month for planned maintenance. We will communicate any planned downtime as far in advance as possible.

Please use this form to ask questions or send comments/feedback. We look forward to hearing from you! 


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