GenePattern is Moving to the Cloud!
Posted on Thursday, October 25, 2018 at 06:00PM by GenePattern Team
GenePattern is Moving to the Cloud
At the end of December 2018, the public GenePattern server hosted by the GenePattern team will be running on the Amazon cloud: https://cloud.genepattern.org. This migration will allow us to provide more flexible compute power and support the growing analysis needs of …
Come and work with us! New position open for bioinformatics programmer on our Jupyter Notebooks team!
Posted on Tuesday, August 14, 2018 at 04:43PM by GenePattern Team
We in the Mesirov Lab at UCSD are looking for a bioinformatics programmer to develop methods for the multi-omic analysis of cancer and other diseases, and to disseminate those methods via Jupyter notebooks and GenePattern
to the worldwide genomics community.
DESCRIPTION
The Department of Medicine is responsible for …
Final Update to CentOS 5 Compute Node Availability for Broad-hosted Servers
Posted on Wednesday, July 18, 2018 at 03:01PM by Barbara Hill
On June 22, 2018, there was a fire at the main data center for the Broad Institute, resulting in an end of service for the last remaining CentOS 5 node, which enabled the running of the following legacy modules on our Broad-hosted servers:
- ApplyGatingML
- CopyNumberInferencePipeline (SNPFileCreator_SNP6, Birdseed, CopyNumberInference, CopyNumberNoise …
Updates to Job Runtime Settings for Public GenePattern server hosted at the Broad Institute
Posted on Tuesday, May 08, 2018 at 02:23PM by GenePattern Team
To help alleviate some of the heavy traffic we have seen in recent months on the public GenePattern server hosted at the Broad Institute, we have implemented a job.walltime limit of 36 hours
- This means that, by default, jobs will be limited to running for 36 hours. After that …
Updates to Compute Node Availability for Broad-hosted Public Server
Posted on Monday, May 07, 2018 at 12:57PM by GenePattern Team
Due to an end of service, we have just one CentOS 5 node for the running of legacy modules on the GenePattern server hosted at the Broad Institute:
- This means that some of our legacy modules which depend on CentOS 5 may spend longer in the pending state.
- This includes …