On June 15, 2026, the main, freely available GenePattern server, cloud.genepattern.org, will be retired from service and all user data deleted. If you have any data you would like to retain, please download it before that date. This notice also applies to the GenePattern Notebook and g2nb applications.
If you would like to use any of the GenePattern analyses or run GenePattern locally, you can do any of the following:
Run GenePattern modules via an LLM. Use the local GenePattern runner utility https://github.com/genepattern/local_genepattern_runner_mcp to run analyses on your own computer without a GenePattern server. This supports running modules from a terminal window or installing a MCP server to allow your LLM (e.g. Claude Desktop) to run modules for you.
