GenePattern needs your support!
Posted on Wednesday, June 11, 2025 at 09:50AM by GenePattern Team
We are asking for your help with ensuring the continued funding and enhancement of the GenePattern ecosystem.
We propose to expand the tools available to include new approaches such as immuno-oncology, spatial transcriptomics, metabolomics, and multi-omic assays. Importantly, we will also incorporate LLMs to create an agent for GenePattern that …
Uploading Large Files to GenePattern
Posted on Friday, June 06, 2025 at 09:50AM by GenePattern Team
Many modern GenePattern analyses require multi-gigabyte input files. For example, AmpliconSuite runs might use FASTQ files that are 70GB or larger. Here are some tips for uploading and analyzing large files in GenePattern.
Methods for Uploading Large Files
There are three ways to upload large files to GenePattern:
GenePattern needs your support
Posted on Thursday, April 25, 2024 at 03:50PM by GenePattern Team
If you are a GenePattern user, we would greatly appreciate your help in continuing this resource.
We are preparing a grant proposal to NCI's Information Technology for Cancer Research program for the sustainment of the GenePattern server and GenePattern Notebooks. We would greatly appreciate your email of support to accompany …
GenePattern Coverage and Support December 23, 2021 - January 2, 2022
Posted on Tuesday, December 21, 2021 at 11:25AM by Barbara Hill
From December 23, 2021, through January 2, 2022, the GenePattern team will be out of the office for our annual holiday closing. During this time, the GenePattern and GenePattern Notebook servers and repositories will remain up. We will be monitoring them and, should anything happen to disrupt service, we will …
End of Support for GParc
Posted on Thursday, December 09, 2021 at 03:47PM by Barbara Hill
As of December 13, 2021, GParc (GenePattern Archive) is no longer supported, and the website has been archived.
The modules themselves are still available for install from the GParc module repository.
Documentation for most* of the modules is archived in this public GitHub repository.
*module doc which was hosted on …