GenePattern Team Blog


The Outage: October 17-20, 2013

Posted on Tuesday, October 01, 2013 at 03:48PM by GenePattern Team

The Outage is a scheduled, major four-day disruption to most Broad IT services. In preparation for our move into a new building the Broad IT Services group will move all central IT hardware to a new facility. During the move, which will take place from 12:01 am* Thursday, October …

Read More


GenePattern 3.7.0

Posted on Tuesday, October 01, 2013 at 02:21PM by GenePattern Team

GenePattern 3.7.0 has been released! 

3.7.0 (build 12335)  is available for use on our Public GenePattern Server,  via download and as an Amazon Machine Image (AMI)

New features include:

  • Simplified Publication of modules from GenePattern to GPARC
  • Enhanced File Input

We also made some user requested …

Read More


Visualizer launching problems and other Java related issues

Posted on Wednesday, July 17, 2013 at 11:23AM by David Eby

UPDATE MARCH 17, 2017 : Java applet visualizers no longer work in any browser. Please click here to read the blog post.

We have recently been getting many reports from users having trouble launching GenePattern visualizers - HeatMapViewer, HierarchicalClusteringViewer, PCAViewer and so on - especially on Mac computers.  There have also been reports …

Read More


GenePattern 3.6

Posted on Thursday, May 30, 2013 at 02:11PM by GenePattern Team

GenePattern 3.6 contains several new features and fixes.

New Features

Updated Job Submit Page

In GenePattern 3.6, the job submit page (the page that appears when you select a module or pipeline) has been revised for ease of use.  The user interface has been streamlined …

Read More


RNA-seq QC in GenePattern

Posted on Tuesday, March 05, 2013 at 11:28AM by The GenePattern Team

Overview

After aligning and/or assembling your RNA-seq data, it is important to take a closer look at the content of those result files before continuing with further analysis; in part, because the results of that investigation may, in fact, point you toward how you should best analyze your data …

Read More

Displaying Page 16 of 18