The public GenePattern server hosted by the GenePattern team was officially migrated to the Amazon cloud: https://cloud.genepattern.org on January 1, 2019. To support this migration, GenePattern now requires that all modules be run in a Docker container.
More information about our use of Docker and the administration of GenePattern in the cloud can be found in our wiki on GitHub.
Please note that GenePattern releases are now hosted on GitHub along with our source code.
Added resources/installer_example.properties file for headless Linux install
Kallisto - beta implementation. Intended to be used for RNA quantitation against a human index (Homo_sapiens.GRCh38.95_kalllisto_index).
PreprocessReadCounts renamed as VoomNormalize
GenePattern Notebook Repository - The Repository was updated to v19.02 in February, and has just been updated to v19.05. Read more about these updates in the release notes, by clicking here.